rs29484143 SNP Detail

Summary

• ID
  rs29484143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69913295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTGAAGTG ATATGGAGCA ATTTAGGGTA TTCTGAAAGA
  TTTGTGGGTT ACTGTAAATT GCAGTCCAGA TCATTGGTGA AATTATTATT TTGAGACAGG
  K
  TCTCACTCTG TAGGCCTGGC TTGCCTGGAA CTCACAGAGA CCAGCCTGTC TCTGCCTCCC
  TAGTGCTAAT GACATGCAAC ACCACGGCTA GCCTGAAGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38860981	mCV22952739	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	G
ss132364055	ENSMUSSNP4999255	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss323732627	CHEV_11_69835971	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29484143					SNP	T	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69913295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	608 bp distal
Cpgi3169	CpG island 3169	1382 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1374 bp downstream
Rr402686	regulatory region 402686	1007 bp downstream
Rr450198	regulatory region 450198	1482 bp distal
Rr450199	regulatory region 450199	1047 bp distal
Rr450200	regulatory region 450200	425 bp distal
Rr450201	regulatory region 450201	1056 bp proximal
Tssr102634	transcription start site region 102634	1453 bp upstream