rs29484472 SNP Detail

Summary

• ID
  rs29484472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27388259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG TACCCAACCG GCTAGACTGC
  Y
  ATGCACACAA CGCCCACGCC CACGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38864347	mCV22640858	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss323959680	CHEV_12_28023125	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29484472					SNP	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27388259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	487 bp proximal
Rr464225	regulatory region 464225	965 bp distal
Rr464226	regulatory region 464226	within coordinates
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113043	transcription start site region 113043	1887 bp downstream
Tssr113044	transcription start site region 113044	1103 bp upstream
Tssr115964	transcription start site region 115964	1821 bp upstream
Tssr115965	transcription start site region 115965	1772 bp upstream
Tssr115966	transcription start site region 115966	1693 bp upstream
Tssr115967	transcription start site region 115967	1423 bp upstream
Tssr115968	transcription start site region 115968	1409 bp upstream
Tssr115969	transcription start site region 115969	1328 bp upstream
Tssr115970	transcription start site region 115970	1293 bp upstream
Tssr115971	transcription start site region 115971	1237 bp upstream
Tssr115972	transcription start site region 115972	1124 bp upstream
Tssr115973	transcription start site region 115973	762 bp upstream
Tssr115974	transcription start site region 115974	705 bp upstream
Tssr115975	transcription start site region 115975	674 bp upstream
Tssr115976	transcription start site region 115976	654 bp upstream
Tssr115977	transcription start site region 115977	636 bp upstream
Tssr115978	transcription start site region 115978	10 bp upstream
Tssr115979	transcription start site region 115979	75 bp downstream
Tssr115980	transcription start site region 115980	242 bp downstream
Tssr115981	transcription start site region 115981	923 bp downstream
Tssr115982	transcription start site region 115982	1146 bp downstream
Tssr115983	transcription start site region 115983	1924 bp downstream
Tssr115984	transcription start site region 115984	1939 bp downstream
Tssr115985	transcription start site region 115985	1997 bp downstream