rs29484979 SNP Detail

Summary

• ID
  rs29484979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119159892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG GTGGCAGGGA CCCAAGCCAT
  Y
  CCTGGCTTCA TAGCAAGTTA AGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38859208	mCV22647455	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss132903857	ENSMUSSNP453475	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29484979					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119159892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4265	CpG island 4265	418 bp distal
Gaa	glucosidase, alpha, acid	within coordinates
Rr246278	regulatory region 246278	91 bp distal
Rr403185	regulatory region 403185	909 bp downstream
Tssr106170	transcription start site region 106170	1098 bp downstream
Tssr106171	transcription start site region 106171	967 bp downstream
Tssr106172	transcription start site region 106172	1099 bp upstream
Tssr106173	transcription start site region 106173	1161 bp upstream