rs29485316 SNP Detail

Summary

• ID
  rs29485316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69299043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTCACC TGCCTCCGGG
  CAGCCATGAG CTTCGGGGAG GAGGATGGGG TGGGCAGGAG CTCCAAGCCC CAGCACAGCT
  CAAGCCCCCA AGGGCAAAGG CTTCCCGTGC AGAGCGGGCC CCTGGAGGGT CCACTGCCCG
  ATGCATCCAG CCTAAATCAG CGACAAGAGA TCATGCTCTA ACAGGGAAGC AAAAACCTTC
  R
  GCCATGTTTT CAGCCAAACC TGTTCCAATC TTTCCCTTAC CAGGTCAGCA GTGGCCCCAG
  GAGCCCTGGA GATGGGGCAC GGCCCCCTGC CCCAGCTCTC TGGCACGATG GTCCAGCTCC
  AACTGCCCTT AACAATAGTG CCCACTGTTT CCAGGTGACA GTCTCTGGCC TTCTGCAACC
  AATTCTACAG AGAGAAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38860899	mCV22780236	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss132355565	ENSMUSSNP247154	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29485316					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69299043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	302 bp proximal
Gm72933	predicted gene, 72933	1537 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	1657 bp upstream
Rr402670	regulatory region 402670	378 bp upstream
Rr402671	regulatory region 402671	1142 bp upstream
Tssr3543	transcription start site region 3543	463 bp downstream
Tssr102455	transcription start site region 102455	1339 bp downstream
Tssr102456	transcription start site region 102456	694 bp upstream
Tssr102457	transcription start site region 102457	1064 bp upstream
Tssr102458	transcription start site region 102458	1457 bp upstream
Tssr102459	transcription start site region 102459	1477 bp upstream
Tssr102460	transcription start site region 102460	1510 bp upstream
Tssr102461	transcription start site region 102461	1553 bp upstream
Tssr102462	transcription start site region 102462	1581 bp upstream
Tssr108661	transcription start site region 108661	1447 bp upstream
Tssr108662	transcription start site region 108662	597 bp upstream
Tssr108663	transcription start site region 108663	568 bp upstream
Tssr108664	transcription start site region 108664	386 bp upstream
Tssr108665	transcription start site region 108665	341 bp downstream
Tssr108666	transcription start site region 108666	929 bp downstream
Tssr108667	transcription start site region 108667	1175 bp downstream
Tssr108668	transcription start site region 108668	1196 bp downstream
Tssr108669	transcription start site region 108669	1211 bp downstream
Tssr108670	transcription start site region 108670	1330 bp downstream
Tssr108671	transcription start site region 108671	1667 bp downstream