rs29485339 SNP Detail

Summary

• ID
  rs29485339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70212326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAGGGCGA TCGACAGTTT TCTTGAACTC ACCGATACAC
  ATTCCTTCTG TTCTCCAGCT CCTGCTCTCG ATACTTCCTA AACAGGTTCT GAGTGTCATC
  R
  GTTACCTTCA GGGCTGGAAG AAGCAGACAC AAAAGTGTGT CCTCTTAGGG CACCGCTCTG
  TGCCCTCCAT CTCATCCTTT CTCGTCTCCC CCGCTCCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38861011	mCV23935521	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss132369448	ENSMUSSNP5801342	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323735020	CHEV_11_70135002	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29485339					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70212326 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	within coordinates
Cpgi3180	CpG island 3180	157 bp proximal
Rr450275	regulatory region 450275	331 bp proximal
Tssr108941	transcription start site region 108941	964 bp downstream
Tssr108942	transcription start site region 108942	1002 bp downstream
Tssr108943	transcription start site region 108943	1020 bp downstream