rs29485494 SNP Detail

Summary

• ID
  rs29485494
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83327391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTC CAAGCTTTCA CACATTCTCA
  K
  TGGGGTCCCC TCTCCAGGGG GTTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38861310	mCV23038077	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	G
ss132469247	ENSMUSSNP1345147	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss323767163	CHEV_11_83250067	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29485494					SNP	T	T	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83327391 () rs orientation: forward

Symbol	Name	Function Class
1700020L24Rik	RIKEN cDNA 1700020L24 gene	1129 bp upstream
Tssr3609	transcription start site region 3609	1161 bp upstream
Tssr103697	transcription start site region 103697	1081 bp upstream
Tssr103698	transcription start site region 103698	1090 bp upstream
Tssr103699	transcription start site region 103699	1113 bp upstream
Tssr103700	transcription start site region 103700	1144 bp upstream