rs29485591 SNP Detail

Summary

• ID
  rs29485591
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11506224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTAAAAT ACATCGCCAC
  TTGTTGTCAT GTGGGCCTCT GCAAATTACA TGCCTGGTTA GAGACCTGGA GCTGAGCACT
  AAAGGGTCCT GCTGGCTTCC TCTCCCCCTC CTTCAAAATG CAAAATTTTT AATTTAATTT
  AATTTAATTT AATTCTTTTT ACTTATTCAC TTTACATCCT GCTCACTGCC CACCTCCCAG
  W
  CTCCCCTTCC ACAATCCTTC CCCCATCTTC CCTTCCCCTT CTCTGAACAG GTGCCTCCCC
  CAGCTATTCC CCCTACCCTG GCAAGTCAAG TCTCTTCAAA GCTAGACACT TCCTCTCCCA
  TTGAGGCCAG ACAAGGCAGC CTAGCTAGAA CACATCTCAC AGGCAGGCAA CGGCTTTAGG
  ATAGCCCTGC TCCAGTTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss38860420	mCV24438510	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss323561259	CHEV_11_11456227	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs29485591					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11506224 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	1186 bp upstream
Gm29945	predicted gene, 29945	within coordinates
Rr402417	regulatory region 402417	960 bp upstream
Tssr100349	transcription start site region 100349	1164 bp upstream
Tssr100350	transcription start site region 100350	1177 bp upstream
Tssr100351	transcription start site region 100351	1708 bp upstream
Tssr100352	transcription start site region 100352	1783 bp upstream