rs29486500 SNP Detail

Summary

• ID
  rs29486500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104120648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAC CATCTGTAAT GGGATCCGAT
  R
  CCCTCTCTGG TATGTGTGAA GACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38858646	mCV24642311	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss132752553	ENSMUSSNP695373	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29486500					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104120648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3985	CpG island 3985	1150 bp proximal
Gm72530	predicted gene, 72530	within coordinates
Mapt	microtubule-associated protein tau	1568 bp upstream
Rr457760	regulatory region 457760	1078 bp proximal
Rr457761	regulatory region 457761	1512 bp proximal
Rr457762	regulatory region 457762	1773 bp proximal
Rr457763	regulatory region 457763	1982 bp proximal
Tssr3695	transcription start site region 3695	1706 bp upstream
Tssr105373	transcription start site region 105373	1620 bp upstream
Tssr105374	transcription start site region 105374	1643 bp upstream
Tssr105375	transcription start site region 105375	1695 bp upstream
Tssr105376	transcription start site region 105376	1752 bp upstream