rs29486526 SNP Detail

Summary

• ID
  rs29486526
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93775187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCATAGC CTCATGAGGA
  GTATCTCTTG TTCTATGTGC TCCATCTCCA CCTTCTTCAA ACTTTATACC ACACCCACAC
  ACTCGAAACC TAAACCTAGC ACTCAAAAAA AAAAAAAAAA AAAAAAAAAA CCCTTCAAAT
  GATCTGAGCT TTCTCCCAAC CTACAGGGCA GTGTCCAAGG AGCCAACTGC AGTATCCACC
  M
  GCACTGCTGA TTTAAGATCT TTCAAAGCCC ATCAAGTGAG TCCTTTGGAT ACAGAACTGT
  CCCACAGCTC TTAACATAAC TGGTCTCCAC CTCCCAAAGA AGGCTGCTGC AGCTCTCCAT
  CAAAGCACCC ACACAAAGGG TGAACTAAGC AAATGCTGAT ATTCCCATTG AGTCAGTCAG
  CTTACCCTAT CTAAAAGACG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38860438	mCV22887074	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss132628016	ENSMUSSNP1198144	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss323810019	CHEV_11_93745675	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29486526					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93775187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	461 bp proximal
Gm72169	predicted gene, 72169	within coordinates
Mbtd1	mbt domain containing 1	1491 bp upstream
Rr247507	regulatory region 247507	within coordinates
Rr366736	regulatory region 366736	1323 bp upstream
Tssr3641	transcription start site region 3641	1463 bp upstream
Tssr104149	transcription start site region 104149	741 bp upstream
Tssr104150	transcription start site region 104150	910 bp upstream
Tssr104151	transcription start site region 104151	1523 bp upstream
Tssr104152	transcription start site region 104152	1776 bp upstream
Tssr104153	transcription start site region 104153	1796 bp upstream
Tssr104154	transcription start site region 104154	1868 bp upstream
Tssr104155	transcription start site region 104155	1884 bp upstream
Tssr110106	transcription start site region 110106	96 bp upstream
Tssr110107	transcription start site region 110107	1299 bp downstream
Tssr110108	transcription start site region 110108	1363 bp downstream
Tssr110109	transcription start site region 110109	1391 bp downstream
Tssr110110	transcription start site region 110110	1730 bp downstream
Utp18	UTP18 small subunit processome component	within coordinates