rs29486633 SNP Detail

Summary

• ID
  rs29486633
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51181946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATTTAGG AGGCTGAATT GTGTGAATCT CTCTACAAGT
  TGGGGGCTGG CTTAAACTAT ATAGTTGAGA TGCAGGTCCA GCCTGGGCTT CAGAACGAAA
  M
  TAAATAAATA AATAAATAAA TAAATAAATA AATAAATAAA TGCCAACCAT TGGGCATATT
  GATGAGCGCC TTTAATCCCA GCACTTTGGA GGCAGAGGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38859650	mCV23306654	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss132120103	ENSMUSSNP773736	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss323667625	CHEV_11_51104621	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29486633					SNP	A	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51181946 () rs orientation: forward

Symbol	Name	Function Class
Col23a1	collagen, type XXIII, alpha 1	within coordinates
Cpgi2834	CpG island 2834	189 bp distal
Rr446561	regulatory region 446561	1189 bp distal
Rr446562	regulatory region 446562	676 bp distal
Tssr101277	transcription start site region 101277	1365 bp downstream
Tssr101278	transcription start site region 101278	1108 bp downstream