rs29486654 SNP Detail

Summary

• ID
  rs29486654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36267715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATAGGCT GGGCTTGTAG
  CTCAGTAGCT ACAATGCTTG CCCAGCATGA AGCTCTGTGT TCAATCTTCC TCATTACAGA
  AAAAAAGGAT GTAGTAACAT ACACCTACAA TCAAGGCACA ATGGAGGTGG AGGCAGGAGG
  ATCAGAAATT CAAGGTCATT CCTGGCTACA ACGGGAGTTA GATGTCAGCC TCAGCTACAT
  R
  TGAGACCCCG TCTCCAAGGG GGGAAAGTGA TATAATCAAT AAATCGGGTT TAATAGATGG
  GAAAAATGAA AATGAAGGAA TTAAAAACAT CACCCTGTGG TAGGAAGTTC AGGTTGCTTA
  TCAATAATCA GACATGTGGA TTTCGAGGTT CTACAAAGCA GGACCACCGT CTCTCCCGTT
  AGCCTTCTCT GCTTTGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38866015	mCV24412258	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss137628420	ENSMUSSNP1306257	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss324007789	CHEV_12_36944303	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29486654					SNP	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36267715 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm60325	predicted gene, 60325			585 bp upstream
Lrrc72	leucine rich repeat containing 72			Intron
				Noncoding-Transcript-Variant
Tssr116139	transcription start site region 116139			456 bp downstream
Tssr116140	transcription start site region 116140			472 bp downstream