rs29486725 SNP Detail

Summary

• ID
  rs29486725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:28532761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGAGGTG ATGACAATGC TAGTAAGGGA AGAAAATCAG
  GAGAGCTAGT AGAAGATTTG AAGGCAGAAA TCTTGCTTAC CTGCACCCAG TACCGAGTCA
  Y
  ACTCACACTG GCTCCTCGGG TGGTACCCGA GGCTTCTCTC CTGTTCTTAG CAGTTGTGTC
  CTTTCTTTGC CCTCTGCTCA CCAGAAAGCT AGTGGTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38861441	mCV23805392	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss131877063	ENSMUSSNP6086930	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29486725					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28532761 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc85a	coiled-coil domain containing 85A			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Cpgi2667	CpG island 2667			386 bp proximal
Rr385862	regulatory region 385862			within coordinates
Rr444112	regulatory region 444112			196 bp distal
Rr444113	regulatory region 444113			1224 bp proximal
Rr444114	regulatory region 444114			1602 bp proximal
Tssr107205	transcription start site region 107205			1313 bp downstream
Tssr107206	transcription start site region 107206			1458 bp downstream
Tssr107207	transcription start site region 107207			1499 bp downstream