rs29487327 SNP Detail

Summary

• ID
  rs29487327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69621212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGGAAG AAGGCATGCC
  CATTTGGAGA ACTAGTTAAA GCTGATTAGA AGTTTTAAGT CCGTAGAAGC CGCATGTCAG
  ATATAAAGCT GAAGTTCACC TTGAACTTTA TTTTTAGAAC TGCACTAATT AGAACAAAGT
  TAGACTCGTA AAGGCCTCTT CCTTGCACAG ACGGGAATCT ACAGCAGAAA GGCCATTTAC
  R
  AATCACAACA TATGCAGCTT CGTGAGCCAC ATAGGTTGAA CAGAATGAAA CAGAAAGCTA
  CACCAAAGAC AACTTCCTGG GAAAGCCGTC TCACTCAGCT TCTGCCGTGT TTTCTCCAGC
  AAGGACCCTC CTAATGGGTA GACTAGTTCT GAAAATCAAA TTTAATTAAA AATTTTTAAA
  ATCTGAGGGC TGGCTGCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38865645	mCV22702554	ABI	CRAMUS_MOUSE	f	SNP		G	A				A		A
ss51017761	NES14400707	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G		G	A	A	A	G	A	A	G	G
ss137859499	ENSMUSSNP4206243	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29487327					SNP	G	G	A	A	A	G	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017761	NES14400707	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69621212 () rs orientation: forward

Symbol	Name	Function Class
Rr257073	regulatory region 257073	1012 bp distal
Rr257074	regulatory region 257074	189 bp proximal
Rr403327	regulatory region 403327	106 bp upstream