rs29487448 SNP Detail

Summary

• ID
  rs29487448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101674408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAGTAAAT TGGCCCTCGG AGTTAGGAAG AAGTGAAATG
  AAGAGAGTAA AAAACCAAGC AAGGTTCCAG CAACTCCAGA AGATAGGTAA TAAATTACTC
  Y
  TTATTCCTCC CGTTTCTCAT TGCTCTCTTT CAATACCTCA ACACCCCAAC ACTACACCTA
  GGCCAGGAGC CTCCTGCCAG ACAAACTCTG CAAATGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38858557	mCV24853975	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29487448					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101674408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	484 bp proximal
Etv4	ets variant 4	within coordinates
Rr402993	regulatory region 402993	1691 bp upstream
Tssr110962	transcription start site region 110962	703 bp downstream
Tssr110963	transcription start site region 110963	740 bp downstream
Tssr110964	transcription start site region 110964	845 bp downstream
Tssr110965	transcription start site region 110965	878 bp downstream
Tssr110966	transcription start site region 110966	934 bp downstream
Tssr110967	transcription start site region 110967	1026 bp downstream
Tssr110968	transcription start site region 110968	1084 bp downstream
Tssr110969	transcription start site region 110969	1231 bp downstream
Tssr110970	transcription start site region 110970	1259 bp downstream
Tssr110971	transcription start site region 110971	1584 bp downstream
Tssr110972	transcription start site region 110972	1620 bp downstream
Tssr110973	transcription start site region 110973	1643 bp downstream
Tssr110974	transcription start site region 110974	1670 bp downstream