rs29488084 SNP Detail

Summary

• ID
  rs29488084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69344147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCG GGTGACTGTG GCCCGAGGTA
  Y
  GGAAAAGGGT GGGGGCGAGG GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38873706	mCV22786985	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss137856849	ENSMUSSNP5093365	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss324083699	CHEV_12_70398360	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29488084					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69344147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	within coordinates
Klhdc2	kelch domain containing 2	within coordinates
Rr467020	regulatory region 467020	641 bp distal
Rr467021	regulatory region 467021	within coordinates
Rr467022	regulatory region 467022	1856 bp proximal
Tssr113629	transcription start site region 113629	1381 bp downstream
Tssr113630	transcription start site region 113630	575 bp downstream
Tssr113631	transcription start site region 113631	469 bp downstream
Tssr113632	transcription start site region 113632	440 bp downstream
Tssr113633	transcription start site region 113633	430 bp downstream
Tssr113634	transcription start site region 113634	402 bp downstream
Tssr113635	transcription start site region 113635	383 bp downstream
Tssr113636	transcription start site region 113636	26 bp upstream
Tssr116496	transcription start site region 116496	128 bp upstream