rs29488435 SNP Detail

Summary

• ID
  rs29488435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107903940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACG GCACCATCTC ACAGGGCGCA
  Y
  TCCAGAAGCT TAGCCCCAGT GACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38866716	mCV22713238	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss47276568	NES11394637	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	C		C	C	C	T		C	C	C	C		T
ss324151903	CHEV_12_109175891	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29488435					SNP	T	T	T	C	T	T	C	T	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47276568	NES11394637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107903940 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	within coordinates
Tssr117636	transcription start site region 117636	965 bp downstream
Tssr117637	transcription start site region 117637	991 bp downstream
Tssr117638	transcription start site region 117638	1056 bp downstream
Tssr117639	transcription start site region 117639	1071 bp downstream
Tssr117640	transcription start site region 117640	1092 bp downstream
Tssr117641	transcription start site region 117641	1112 bp downstream
Tssr117642	transcription start site region 117642	1149 bp downstream
Tssr117643	transcription start site region 117643	1267 bp downstream
Tssr117644	transcription start site region 117644	1378 bp downstream
Tssr117645	transcription start site region 117645	1409 bp downstream
Tssr117646	transcription start site region 117646	1449 bp downstream
Tssr117647	transcription start site region 117647	1465 bp downstream
Tssr117648	transcription start site region 117648	1525 bp downstream
Tssr117649	transcription start site region 117649	1551 bp downstream
Tssr117650	transcription start site region 117650	1589 bp downstream