rs29488813 SNP Detail

Summary

• ID
  rs29488813
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100853115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT GATGCAGCTC CTAGAGGCAG
  M
  TCTTTACACG CGTTCGAATC AATCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38873566	mCV25100849	ABI	CRAMUS_MOUSE	f	SNP		C						A		C
ss47236598	NES11413494	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A		C	C		C	A	A		C
ss137997062	ENSMUSSNP2530045	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss324138812	CHEV_12_102125066	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29488813					SNP	C	C	A	A	A	C	A	A	C	C	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47236598	NES11413494	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100853115 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	1215 bp upstream
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	822 bp proximal
Rr471363	regulatory region 471363	1043 bp proximal
Tssr114718	transcription start site region 114718	975 bp downstream
Tssr117330	transcription start site region 117330	980 bp downstream
Tssr117331	transcription start site region 117331	1014 bp downstream
Tssr117332	transcription start site region 117332	1034 bp downstream
Tssr117333	transcription start site region 117333	1069 bp downstream
Tssr117334	transcription start site region 117334	1095 bp downstream
Tssr117335	transcription start site region 117335	1170 bp downstream
Tssr117336	transcription start site region 117336	1217 bp downstream