rs29488980 SNP Detail

Summary

• ID
  rs29488980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:61626182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGT CCAAATAATA ATGACAAGCA
  R
  ATTTGAAGTA GCAGGAGGCA CAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38869346	mCV22553506	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss137814876	ENSMUSSNP6870317	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G				A
ss324064058	CHEV_12_62680383	CHEVERUD	SCREENING_POP	f	SNP					A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29488980					SNP	A	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:61626182 () rs orientation: forward

Symbol	Name	Function Class
Gm30738	predicted gene, 30738	278 bp upstream
Lrfn5	leucine rich repeat and fibronectin type III domain containing 5	within coordinates