rs29489541 SNP Detail

Summary

• ID
  rs29489541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111502936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC CAGGCTGGGC TACATACTGA
  R
  AGGGCATCAA AGTGATTCTT AGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38875585	mCV24937709	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss138696515	ENSMUSSNP6648431	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
ss324159937	CHEV_12_112774713	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29489541					SNP	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111502936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	945 bp proximal
Eif5	eukaryotic translation initiation factor 5	1599 bp upstream
Gm56529	predicted gene, 56529	934 bp upstream
Gm56546	predicted gene, 56546	515 bp downstream
Gm58608	predicted gene, 58608	1514 bp upstream
Rr403512	regulatory region 403512	1325 bp upstream
Tssr115316	transcription start site region 115316	842 bp downstream
Tssr115317	transcription start site region 115317	456 bp downstream
Tssr115318	transcription start site region 115318	391 bp downstream
Tssr115319	transcription start site region 115319	690 bp upstream
Tssr115320	transcription start site region 115320	1647 bp upstream
Tssr115321	transcription start site region 115321	1762 bp upstream
Tssr115322	transcription start site region 115322	1829 bp upstream
Tssr115323	transcription start site region 115323	1967 bp upstream
Tssr117828	transcription start site region 117828	1415 bp downstream