rs29489770 SNP Detail

Summary

• ID
  rs29489770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110667073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCAGGT AGATTCTGAG
  TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGACACA GAGAAACCCT
  GTCTCCAAAA CCAAACCAAC CAAACAACAA AGCAGCAGCC CGGTTTCACC TAGCTAGAAG
  GAAGCTGCTT AGGCAGCCGC AGGCAACGGC ATGAAACTGT TTCCGGCTCA CGTCCCAATG
  Y
  GGCTGACCAT TATTGGGATA TAAGCGGCTG GTGCAGGCAC AGTTCAGTAA AACTGGAAGA
  CCCTGGAAAA GAAGGATGAG AGAGACTGGA GTGTATGTGA GTGGGGTCCA AAACTAGGGT
  GTGGGTGTAA GAGAGAATGG GTAGGAGCTT CCATCCCAAC TGTTAGCACT TTGGGCTCTG
  TCCCAGTTAC CTGGCAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38871393	mCV24497715	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss138692785	ENSMUSSNP5645919	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29489770					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110667073 () rs orientation: forward

Symbol	Name	Function Class
Gm60091	predicted gene, 60091	1491 bp downstream
Gm60092	predicted gene, 60092	1061 bp downstream
Rr472970	regulatory region 472970	1564 bp distal
Rr472971	regulatory region 472971	1136 bp distal
Rr472972	regulatory region 472972	905 bp distal
Rr472973	regulatory region 472973	29 bp proximal
Rr472974	regulatory region 472974	1899 bp proximal
Tssr115233	transcription start site region 115233	1535 bp downstream