rs29489966 SNP Detail

Summary

• ID
  rs29489966
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112639806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT GGAGCAAGAC CAGGGGCCTG
  K
  GGGAAGGAGG AGTTTGGCCA CACAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38875599	mCV23889318	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss138725597	ENSMUSSNP4822904	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29489966					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112639806 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	within coordinates
Gm30150	predicted gene, 30150	1116 bp upstream
Rr473550	regulatory region 473550	1819 bp distal
Rr473551	regulatory region 473551	1318 bp distal
Rr473552	regulatory region 473552	443 bp distal
Rr473553	regulatory region 473553	within coordinates
Rr473554	regulatory region 473554	894 bp proximal
Rr473555	regulatory region 473555	1007 bp proximal
Rr473556	regulatory region 473556	1050 bp proximal
Rr473557	regulatory region 473557	1610 bp proximal
Tssr115391	transcription start site region 115391	1040 bp upstream
Tssr117875	transcription start site region 117875	1795 bp upstream
Tssr117876	transcription start site region 117876	1328 bp upstream
Tssr117877	transcription start site region 117877	644 bp downstream
Tssr117878	transcription start site region 117878	703 bp downstream
Tssr117879	transcription start site region 117879	821 bp downstream
Tssr117880	transcription start site region 117880	971 bp downstream
Tssr117881	transcription start site region 117881	1002 bp downstream
Tssr117882	transcription start site region 117882	1381 bp downstream
Tssr117883	transcription start site region 117883	1402 bp downstream
Tssr117884	transcription start site region 117884	1454 bp downstream