rs29490014 SNP Detail

Summary

• ID
  rs29490014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29191097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTATCCAA GAGGGAAACC AGAGTACCAA GTTTAGCACA
  TAGGTGCAGA GCTCTGAAGG AAATGTTTTG AGAATGATCT CTGATGTTTT GGCTGGCAAC
  Y
  ACAGATTCCA TCAGACAATG GGGATTTTTT TTGTTTCTGC ACTGCTTAGA CAAGCCAGTG
  GACATCAGTC ACGCCCTGTG TGACAGGTGC TGTGAAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38871183	mCV22626385	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss61587165	NES17538029	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T		T	C	C		C	T	T	C		C
ss137517935	ENSMUSSNP7097543	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss323976321	CHEV_12_29825963	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29490014					SNP	T	T	T	T	C	T	C	T	T	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61587165	NES17538029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29191097 () rs orientation: forward

Symbol	Name	Function Class
Gm31333	predicted gene, 31333	831 bp upstream
Rr464389	regulatory region 464389	341 bp proximal
Rr464390	regulatory region 464390	842 bp proximal