rs29490198 SNP Detail

Summary

• ID
  rs29490198
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111504037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC AGCCGGACCT GACTGGGGTC
  S
  AGACCACCCT AAGTTGCGCG GGGAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38872801	mCV24937700	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	C
ss138696521	ENSMUSSNP1368996	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss324159939	CHEV_12_112775814	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29490198					SNP	G	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111504037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	498 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	413 bp upstream
Gm60631	predicted gene, 60631	916 bp downstream
Rr403512	regulatory region 403512	224 bp upstream
Rr473212	regulatory region 473212	1558 bp distal
Rr473213	regulatory region 473213	within coordinates
Rr473214	regulatory region 473214	1128 bp proximal
Rr473215	regulatory region 473215	1190 bp proximal
Tssr115316	transcription start site region 115316	1943 bp downstream
Tssr115317	transcription start site region 115317	1557 bp downstream
Tssr115318	transcription start site region 115318	1492 bp downstream
Tssr115319	transcription start site region 115319	398 bp downstream
Tssr115320	transcription start site region 115320	546 bp upstream
Tssr115321	transcription start site region 115321	661 bp upstream
Tssr115322	transcription start site region 115322	728 bp upstream
Tssr115323	transcription start site region 115323	866 bp upstream
Tssr115324	transcription start site region 115324	1182 bp upstream
Tssr115325	transcription start site region 115325	1216 bp upstream
Tssr115326	transcription start site region 115326	1831 bp upstream
Tssr117828	transcription start site region 117828	314 bp downstream
Tssr117829	transcription start site region 117829	976 bp downstream