rs29490231 SNP Detail

Summary

• ID
  rs29490231
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110809067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGACTGAG CTCGATCACC AGCCGCTGCA GAGGGGAGAG
  GAAGGACAAG CTTAGAGTCA TGGAGCCTTA GTGAAGAAGG CCAGGAGAAT CAACTCAGGC
  K
  TCTGGAAAAA GCAAGAGACA CAGAGAAAAG GGGGTTGTCA CACATTCCTG CTATTAGTCC
  CAGCACTGTG GCTTGGGGCT ATGGGTGGAG GCAGGCCGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38871419	mCV25034588	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss138693435	ENSMUSSNP1480681	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss324159081	CHEV_12_112080843	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29490231					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110809067 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	within coordinates
Cpgi5123	CpG island 5123	1468 bp distal
Cpgi5124	CpG island 5124	1134 bp proximal
Cpgi5125	CpG island 5125	1956 bp proximal
Gm26912	predicted gene, 26912	within coordinates
Mok	MOK protein kinase	1694 bp upstream
Rr403503	regulatory region 403503	1498 bp downstream
Rr403504	regulatory region 403504	1049 bp upstream
Rr473007	regulatory region 473007	1717 bp distal
Rr473008	regulatory region 473008	1587 bp distal
Rr473009	regulatory region 473009	1223 bp distal
Rr473010	regulatory region 473010	749 bp distal
Rr473011	regulatory region 473011	459 bp distal
Rr473012	regulatory region 473012	700 bp proximal
Rr473013	regulatory region 473013	1209 bp proximal
Tssr115236	transcription start site region 115236	1596 bp downstream
Tssr117796	transcription start site region 117796	1772 bp upstream
Tssr117797	transcription start site region 117797	1683 bp upstream