rs29490471 SNP Detail

Summary

• ID
  rs29490471
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG CTCCCGTCCA TCATACCAGG
  M
  GAATTCTCCC ATTGGTGAGT ATGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss38867211	mCV22302958	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C	C
ss137401596	ENSMUSSNP1468635	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29490471					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Gm59395	predicted gene, 59395	263 bp upstream
Id2	inhibitor of DNA binding 2	105 bp upstream
Rr403250	regulatory region 403250	within coordinates
Tssr112979	transcription start site region 112979	458 bp downstream
Tssr112980	transcription start site region 112980	240 bp upstream
Tssr112981	transcription start site region 112981	255 bp upstream
Tssr112982	transcription start site region 112982	1231 bp upstream
Tssr115883	transcription start site region 115883	1667 bp upstream
Tssr115884	transcription start site region 115884	404 bp upstream
Tssr115885	transcription start site region 115885	101 bp upstream
Tssr115886	transcription start site region 115886	1042 bp downstream