rs29490477 SNP Detail

Summary

• ID
  rs29490477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT ATGTAGGGTA AGTGAGAGGC
  R
  AGGCTGTGAG GCATTGCCCA ACATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss38871209	mCV23219078	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss138725639	ENSMUSSNP3995749	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss324170105	CHEV_12_113914627	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29490477					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642850 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1584 bp upstream
Cpgi5173	CpG island 5173	1507 bp distal
Cpgi5174	CpG island 5174	1687 bp proximal
Gm30150	predicted gene, 30150	446 bp downstream
Rr369631	regulatory region 369631	877 bp downstream
Rr473554	regulatory region 473554	1995 bp distal
Rr473556	regulatory region 473556	469 bp distal
Rr473557	regulatory region 473557	1413 bp distal
Rr473558	regulatory region 473558	948 bp distal
Rr473559	regulatory region 473559	757 bp distal
Rr473560	regulatory region 473560	511 bp distal
Rr473561	regulatory region 473561	1910 bp proximal
Rr473562	regulatory region 473562	1922 bp proximal
Tssr115391	transcription start site region 115391	1993 bp downstream
Tssr117882	transcription start site region 117882	1652 bp upstream
Tssr117883	transcription start site region 117883	1602 bp upstream
Tssr117884	transcription start site region 117884	1579 bp upstream