rs29491336 SNP Detail

Summary

• ID
  rs29491336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108145836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG GTTCGGTTGC TCCCGAACTC
  M
  CTTTCGCCAA GGGGGTGGGG CGATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38867657	mCV24506031	ABI	CRAMUS_MOUSE	f	SNP		C	A
ss138673160	ENSMUSSNP5032752	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss324152850	CHEV_12_109417787	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29491336					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108145836 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	2 bp upstream
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	within coordinates
Rr472439	regulatory region 472439	372 bp distal
Rr472440	regulatory region 472440	within coordinates
Rr472441	regulatory region 472441	172 bp proximal
Rr472442	regulatory region 472442	326 bp proximal
Setd3	SET domain containing 3	263 bp upstream
Tssr114948	transcription start site region 114948	1080 bp downstream
Tssr114949	transcription start site region 114949	717 bp downstream
Tssr114950	transcription start site region 114950	443 bp downstream
Tssr114951	transcription start site region 114951	408 bp downstream
Tssr114952	transcription start site region 114952	within coordinates
Tssr114953	transcription start site region 114953	216 bp upstream
Tssr114954	transcription start site region 114954	331 bp upstream
Tssr117676	transcription start site region 117676	352 bp upstream
Tssr117677	transcription start site region 117677	238 bp upstream