rs29491472 SNP Detail

Summary

• ID
  rs29491472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110817735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGCAAATG ACAACACACA CCTCACCTCA GGGGAGAGAC
  CAGGAGAGAG AGCTGCCTCC ACCAAAAATA GGGCAGAGAA TAGAATTCTG TGGTCTCCAG
  Y
  GGTTTTGAGG TAGATATTGG CTATTCAAGG CGTGCTGTCT TCCTGACAGC ACTTGCTAGA
  AGAGTGACCC TTGGTGACTG ACCCTCGTTG GGCATTGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38869456	mCV25034343	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss138693477	ENSMUSSNP3277379	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29491472					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110817735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5126	CpG island 5126	within coordinates
Tssr115237	transcription start site region 115237	999 bp downstream
Tssr115238	transcription start site region 115238	976 bp downstream
Zfp839	zinc finger protein 839	within coordinates