rs29491712 SNP Detail

Summary

• ID
  rs29491712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31885169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCAGT TTGGTTGTTG
  TTTGCTGTGT TGTGTTGTGT TTTGTTTCTG ACAAAGTAAA AACATCATGG AGGAGTACGG
  TGGAGGGAAA TAGTTCACCT CACAGCCGCC CAGGAGCAGA GGATAGCATG TTGCTCCTGG
  GGGCTTGCTC CCAGTGATCT ACTTCTTCCC CTTGGCACCA CTGCCAACTT TCTACCCTTT
  Y
  CTCAGTAATA CCATTTGTAT GATTAGACCA TCAAGGATTT CGTCCATTTG TTAAGTTTAG
  GGAGCTTCCC CAAACCCATT ACTAGCAGCT CAGCTCCCAA TGTCTGTAGG GGACATCTCC
  TATTCTAATA GTAATGGTTT GGTACTGCCA TGATGATAAA TTAGAATTCG AAATGTAGAA
  AGAGCTGCAT TGTCTGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38873884	mCV24461553	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss50964973	NES14421272	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	T	T	C	T	T	C
ss137570382	ENSMUSSNP1006093	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29491712					SNP	C	C	C	C	C	C	C	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50964973	NES14421272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31885169 () rs orientation: forward

Symbol	Name	Function Class
Cog5	component of oligomeric golgi complex 5	within coordinates
Rr387038	regulatory region 387038	431 bp upstream