rs29492415 SNP Detail

Summary

• ID
  rs29492415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110664362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACACAAA CATACATGTA
  GGCAAAACAC CAATACACAT AAAATAATAA ATAAAAGCTT AGAAAGAAAA GAAGCCGGGA
  AAGAGGAAGC CAGGCAGTGG TGGCATAAGC CTTTTTAATC CAAGCACTCG GGAGGGAGTC
  AGAGGCAGGT GGATTTCTGA GTTTGATGAC AGCCTGGTCT ACAGGGTGAG TTCCAGGACA
  R
  CCAGGGAAAC CCTGTCTGGG GGAGTTGGGG GGAAGAAAGA AGAAAGAATG TGCTCTGTGG
  ACAAAAACAC AGCAGGCAAT TTCCTCTGGG AGAGGAAGAA AGTCACCCAT CTCCATCTCG
  CCCTCCCTCC AGGGAACGAG GCCCTTTCCC AGCAGCTGAG GAAAGACCTC TGGCCCCCCT
  CTCTGAACTG AGTGGGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38870283	mCV24497753	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss138692758	ENSMUSSNP5592137	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29492415					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110664362 () rs orientation: forward

Symbol	Name	Function Class
4932703K07Rik	RIKEN cDNA 4932703K07 gene	812 bp downstream
Cpgi5120	CpG island 5120	787 bp distal
Gm60092	predicted gene, 60092	1137 bp upstream
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	1533 bp upstream
Rr403501	regulatory region 403501	1326 bp downstream
Rr472969	regulatory region 472969	1043 bp distal
Rr472970	regulatory region 472970	647 bp proximal
Rr472971	regulatory region 472971	1148 bp proximal
Rr472972	regulatory region 472972	1785 bp proximal
Tssr115231	transcription start site region 115231	1978 bp downstream
Tssr115232	transcription start site region 115232	1293 bp downstream
Tssr115233	transcription start site region 115233	1126 bp upstream
Tssr117789	transcription start site region 117789	1666 bp upstream
Tssr117790	transcription start site region 117790	1609 bp upstream
Tssr117791	transcription start site region 117791	1510 bp upstream
Tssr117792	transcription start site region 117792	1481 bp upstream