rs29492427 SNP Detail

Summary

• ID
  rs29492427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36533623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGCTGCA ACAAAACTCT
  AGGCTGACTG ATACCTTTGT AAACATCCAC TTAACAAAGG AGGACTGTAT TCCCTGCCCC
  CCACGTCCAC AAACTGGTTG AGCCCACCCA AGCCTGTTCT GCAAGTTCAG ACAAACCCCA
  AAGATGTTAA AGTGGTAACA GACTCCAGTA CTAGCATACT TTATCTAGAC CTACCCAAGC
  Y
  ATACAAACAG TCTCAAACCA CACTTAACTG AATATGCTGA CTATATCTTG GCAAAAGGGT
  CAATAGTCTA AAAGTTTTCT AAGAAAAGAG CCCCTATGGG ATTTCTTCAT TAATGTAATG
  TGCTTGTTTT TTAATATTGC CCTTCAGCAA ACTTTATAAT AAGTTCAGTT TTGTGATTAA
  AGGGTGTTAT AAAAATTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38868884	mCV22951256	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss61597389	NES17553376	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T		C	C	C	C		C	C	C	C		T
ss137630584	ENSMUSSNP7006375	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324008685	CHEV_12_37210211	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29492427					SNP	C	T	C	T	T	T	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597389	NES17553376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36533623 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	1136 bp downstream
Rr465183	regulatory region 465183	23 bp distal