rs29493085 SNP Detail

Summary

• ID
  rs29493085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47260178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGATTCGG AGCCACCACG TTTGTTTCCG AGGGGTCGTT
  CGAGATGAAG GCTTCCAAAT GAGACCTACT TGCGAGGCTT CCCGTCGCCG GTACGCTGCA
  Y
  CGTGACAGGG ACCCACCACG TTAAGTGCTC ACACCACCAG CGACATAAAT AGGTTTCAAA
  CCGGTGAATG TTAGACAGAT TCACCCTCTT CCTTTCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39072331	mCV24531938	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss324335501	CHEV_13_47202070	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29493085					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47260178 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	501 bp upstream
Rr479039	regulatory region 479039	266 bp distal
Rr479040	regulatory region 479040	within coordinates
Tssr119626	transcription start site region 119626	1110 bp downstream
Tssr119627	transcription start site region 119627	291 bp downstream
Tssr119628	transcription start site region 119628	272 bp downstream
Tssr122369	transcription start site region 122369	1325 bp upstream
Tssr122370	transcription start site region 122370	1178 bp upstream
Tssr122371	transcription start site region 122371	1080 bp upstream
Tssr122372	transcription start site region 122372	1000 bp upstream
Tssr122373	transcription start site region 122373	955 bp upstream
Tssr122374	transcription start site region 122374	827 bp upstream
Tssr122375	transcription start site region 122375	592 bp upstream
Tssr122376	transcription start site region 122376	574 bp upstream
Tssr122377	transcription start site region 122377	531 bp upstream
Tssr122378	transcription start site region 122378	496 bp upstream
Tssr122379	transcription start site region 122379	481 bp upstream
Tssr122380	transcription start site region 122380	469 bp upstream