rs29493108 SNP Detail

Summary

• ID
  rs29493108
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96802974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG AACTATATTC ACTTGTATTT
  W
  AAAAAGAGAA ATTGAAAATG AAATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39071334	mCV24346396	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss145024475	ENSMUSSNP1766198	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss324494670	CHEV_13_97436421	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29493108					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96802974 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	226 bp proximal
Rr281795	regulatory region 281795	626 bp proximal
Rr285480	regulatory region 285480	1397 bp distal
Rr285481	regulatory region 285481	774 bp distal
Tssr123569	transcription start site region 123569	243 bp downstream