rs29494242 SNP Detail

Summary

• ID
  rs29494242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20177812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAAAATA AGGTAATCCT CCAGGAGGAT CGTCCCCCAC
  AGTATCTTCA CTCAAATCTG TAAGCAACGA ATCTAAGATC TTAGAGACAC TAGCTTTGTA
  K
  TCTGAAATGA CACCGGACAT TTCAAGTCAT TTTATTGCCT CCAAAACAAT CTTGAAATAC
  TAGAAATTAT AAATATTTAA GGGTATCATT TCGTTATTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39075058	mCV24019695	ABI	CRAMUS_MOUSE	f	SNP	T	T						G		T
ss51078903	NES14360404	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29494242					SNP	T	T	T	T	T	T	T	G	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51078903	NES14360404	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20177812 () rs orientation: forward

Symbol	Name	Function Class
Gm5446	predicted gene 5446	1379 bp downstream
Gm60857	predicted gene, 60857	within coordinates