rs29494756 SNP Detail

Summary

• ID
  rs29494756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36918443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCGTTCAA CTTAAGTCCC
  ATCCTACGTT TAGTCAAACC ATTTGCGACC GCAGACCTTT AAATAGTTAG TTTAGAGAAC
  GCGGGGGAAA GCTGAAAAAT AGGCATTGCC AACAAGTTCC GGGAGCGACA GAGACTTTAT
  GCACTGGGAA GGCAGAGGGA GGAGAGAAAG AGAGGGAGCG AGGAAGAGAC AGAAAGAGAG
  Y
  GAGAGAGTGA GAGGCTGGGG GGGGGGGGGG AGAGCTGGGA ATGGTTCACT CCATTAGGAG
  GGGGCGGAGG AAGTACAGCC TCACGCCCAC GAGCAGGCCT GACGTGGGGG ATGACACGGA
  TTGATTTTTT TTTTTTTTTA TAATATAGAC ACCTTGGTAG AGAATCACCA TTTATAGTCA
  TAAGACTCTG GAATTAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39070965	mCV24792186	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29494756					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36918443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5451	CpG island 5451			342 bp proximal
Cpgi5452	CpG island 5452			1446 bp proximal
Gm56572	predicted gene, 56572			419 bp upstream
Nrn1	neuritin 1			Intron
				mRNA-UTR
Rr477394	regulatory region 477394			3 bp distal
Rr477395	regulatory region 477395			within coordinates
Rr477396	regulatory region 477396			430 bp proximal
Tssr119271	transcription start site region 119271			387 bp upstream
Tssr122097	transcription start site region 122097			194 bp upstream
Tssr122098	transcription start site region 122098			161 bp upstream
Tssr122099	transcription start site region 122099			84 bp upstream
Tssr122100	transcription start site region 122100			54 bp upstream
Tssr122101	transcription start site region 122101			22 bp upstream
Tssr122102	transcription start site region 122102			within coordinates