rs29494892 SNP Detail

Summary

• ID
  rs29494892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92489281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA ATAAATGTGA TAAATAGATC
  R
  TTAGCAAATG TTTCATCTTT ATAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss39070870	mCV23769143	ABI	CRAMUS_MOUSE	f	SNP		G	A				A		G
ss52680822	NES15522621	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G		G		G		G	A	G		G
ss144934162	ENSMUSSNP5143216	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss324480472	CHEV_13_93122728	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29494892					SNP	G	G	A	A	G	G	A	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52680822	NES15522621	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92489281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	1600 bp proximal
Msh3	mutS homolog 3	within coordinates
Rr403895	regulatory region 403895	1707 bp downstream
Rr403896	regulatory region 403896	1727 bp upstream
Rr483661	regulatory region 483661	1463 bp proximal
Rr483662	regulatory region 483662	1744 bp proximal
Rr483663	regulatory region 483663	1894 bp proximal
Tssr120622	transcription start site region 120622	1975 bp upstream
Tssr123429	transcription start site region 123429	1730 bp downstream