rs29495231 SNP Detail

Summary

• ID
  rs29495231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112576208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCAAAG AGACTTACTA
  AGTGGGCAGA TAACCGAGAT TATCATAGAT GATTGCAAAT TCCCTGAAGA AAAGAAACAG
  GATGTGCTGA GAGCGGCCAG GATCAAGATA CAGATAACAG AAAGGAAGCC TGGGTGCCAC
  CAGCTGCACA CACGTGCTAA GAGAGAGGGA AAGAGGAAAC TGCAATCTAG AAGCCCCCGG
  R
  GTTGAAGCGC TCTTGCTATG TTATAGGGAA GGGAAACGCA CGAGCCTGGA AGAAATAACA
  AAGAATCAGT AGAAGAGGGA GTGGAAAGGA CAGACTCCAG GCCAGGCAGA GCTGGAGTTT
  TATTCCAACT ACTAGAGTTC TGAAAGTCTT CATTAAAGAA GTGCATCCCG GTTTACATTA
  AACATTAATC TGCGAACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39074288	mCV23235843	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss145238590	ENSMUSSNP1337893	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29495231					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112576208 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	1596 bp upstream
Gm59881	predicted gene, 59881	within coordinates
Gm59893	predicted gene, 59893	within coordinates
Rr369776	regulatory region 369776	within coordinates
Rr395952	regulatory region 395952	897 bp downstream
Rr403991	regulatory region 403991	308 bp upstream
Rr486370	regulatory region 486370	1642 bp distal
Rr486371	regulatory region 486371	1141 bp distal
Rr486372	regulatory region 486372	299 bp distal
Rr486373	regulatory region 486373	within coordinates
Rr486374	regulatory region 486374	357 bp proximal
Tssr121117	transcription start site region 121117	1496 bp downstream
Tssr121118	transcription start site region 121118	1442 bp downstream
Tssr124051	transcription start site region 124051	1612 bp upstream
Tssr124052	transcription start site region 124052	313 bp downstream