rs29495376 SNP Detail

Summary

• ID
  rs29495376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23942710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG GCCTAGGAAC ACAAATTCAG
  R
  TTCTTCCAAG TACTGTAGTT TGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39075362	mCV22702543	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss148808299	ENSMUSSNP3859051	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss324291480	CHEV_13_23850596	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29495376					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23942710 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1089 bp upstream
Cpgi5375	CpG island 5375	1230 bp distal
Cpgi5376	CpG island 5376	1952 bp proximal
H4c2	H4 clustered histone 2	1318 bp downstream
Rr388131	regulatory region 388131	869 bp downstream
Rr388132	regulatory region 388132	1069 bp upstream
Rr475943	regulatory region 475943	1704 bp distal
Rr475944	regulatory region 475944	599 bp distal
Tssr118864	transcription start site region 118864	1732 bp downstream
Tssr121748	transcription start site region 121748	1098 bp upstream