rs29495421 SNP Detail

Summary

• ID
  rs29495421
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100895252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACGCTTA CAGCTGTCTG
  AAACTATCGT TCCAGGGAAC CTGACACCCT CTTTTGGGCT CTGTAGCCTA TTGCATACAC
  ATGGAATATA CAAACTCATC TACATACACA CACAAAAAAC TTTTTCTTCA AAATGATGTT
  TTCTGTGTAG CCCTAGCTGT CCTGAACTTG TTCTATAGAC CAGGCTGGCC TTGAACTCGC
  S
  TGTGCTACAA AGGGCCTGGC TGGAGAAGTG ACCCAAGCCC TTGGAGGAGC CCAGAAGATC
  GTGAGTTGAA TCCCAGACAT TGGACGGTTG GAGATTGACT TTTGCTTTTG ATTGTGACTG
  TGCTCTGATA TTTTCCCTCT TGAAGGAAGA AACTGTTTTA GTGGAGCCCA CAGTTAAGAG
  ACATTTAATT GTAAAAAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39073189	mCV25201254	ABI	CRAMUS_MOUSE	f	SNP		G					C	C
ss52685843	NES15521449	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	G	C		C	C	C	C	C	G
ss145091287	ENSMUSSNP6079402	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29495421					SNP	C	G	C	C	G	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685843	NES15521449	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100895252 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	930 bp downstream
Rr269996	regulatory region 269996	1652 bp distal