rs29495581 SNP Detail

Summary

• ID
  rs29495581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGGCAG GCAGTTCACA
  TAAGAATGGC TCCCATAGGT TCATAGGTTT GAATGCTTAA TCACCAAAGA GTGGAACTAT
  TTAAAAGGAT TAAGAGGTAT AGCCCAAGCC AGGCCCAGTG CCTCTCCCTT CCTGCGGCCT
  GGGAATCCGG ATGTAGAACT TTCAGCTGCT TCTCCAGCAC CACGTCTGCC TGCATGCCAC
  R
  TGCTTTCTAG TCATGGTGAC AATGGACTTG AACCTCTCAG ACTATAAGCA AGCCCCAGTT
  AAACGCGTTC CTTTTAAAGA GTTGCTATGG TCATGGTGTC TCTTCACAGC AGGAGAATAG
  AGACTAAGGC ATCCTGTCTC AAGATAATGT TTAAGGGCTG AATAGAGAGC TTGCCTAGTG
  TGATGAGGCC CTGGGTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39074690	mCV22708343	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss148681910	ENSMUSSNP1146346	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29495581					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	944 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	568 bp upstream
Rr369647	regulatory region 369647	1134 bp upstream
Tssr118345	transcription start site region 118345	655 bp upstream
Tssr121451	transcription start site region 121451	889 bp upstream
Tssr121452	transcription start site region 121452	733 bp upstream
Tssr121453	transcription start site region 121453	1084 bp downstream
Tssr121454	transcription start site region 121454	1395 bp downstream
Tssr121455	transcription start site region 121455	1417 bp downstream
Tssr121456	transcription start site region 121456	1523 bp downstream
Tssr121457	transcription start site region 121457	1547 bp downstream