rs29495693 SNP Detail

Summary

• ID
  rs29495693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:55981490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTCAGA TACTCCTTCC
  ACTATCCTCA TAGATCCTGA GCCCCAAAGA AGCACTGAGG CTAATGGGGA CTGCCAGAGG
  AGTGTGCTTT TCAGTAGCAC ATATAGTGAT CAAGGGGGTG GGGGGTGGGG TGGACGTGGG
  AGGACCAACA AGAGGCTGTG CCCCGACTCT GGGCATATTG AAGAATGAGA CTAGCATAAA
  Y
  TCTCTGTTCT TCCACAGCCC CCTCCCCTCC TCACTCACTG TCCTACTCTA AGCAGGGGCT
  TCCGGTATGC ACATGCAGAT ACACACCGGG AGGAAAGCTA CAATCTTTCT GGGGCAGAGG
  CTCATGCACA GCCCCCTTCA TTTTGATGCG TGACTTGGAG GAGGTTTGAG GTTTGACCTT
  CAAGTGAATC TCAGTTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39074400	mCV25143048	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss149038590	ENSMUSSNP7113066	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29495693					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55981490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5690	CpG island 5690	1570 bp distal
Cpgi5691	CpG island 5691	1813 bp proximal
Gm28760	predicted gene 28760	1683 bp downstream
Gm47071	predicted gene, 47071	within coordinates
Pitx1	paired-like homeodomain transcription factor 1	Intron
Rr480568	regulatory region 480568	1762 bp distal
Rr480569	regulatory region 480569	872 bp distal