rs29496239 SNP Detail

Summary

• ID
  rs29496239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20818413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTCACAT GGTAAAAGGG
  AAGAAATAAC TCCTGCAAAT GGTCTTCTCA CCACCACAGT CACACTGTGG CACACATGAA
  CTCTACACAA ATGTACGCGC GCACACACAC ACAATGTGAA AATAAATAAA TGGAGAAACT
  TTTAAAATAA GTCAATATTT AGGTGCAGAA GATTTGAAGA AGATAAAAAA GTAAGCCATG
  Y
  GGATTTGTGG AGGAAGGCAT TTTCTTAAAG GGCAAGCCCA CTCTAATGTC CTCTTGGTAG
  TTGTTCCTGT CATGTCCAAG GTCAAGCAAG TAGTTTGGAG TTTAGAGGTG GGGCAACATA
  ATCTTCTCAT TGAAAACCCA ATTAGAGGAC AACTTGCTGG CCTTCCTTCA GGAGGACACC
  TCTTTGCATC TGAATTCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39071901	mCV25329604	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						C
ss61757504	NES17681598	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C	C	C
ss148772272	ENSMUSSNP5754584	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29496239					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757504	NES17681598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20818413 () rs orientation: forward

Symbol	Name	Function Class
Rr275299	regulatory region 275299	1188 bp proximal