rs29496309 SNP Detail

Summary

• ID
  rs29496309
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67600323 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTCA CTGTGTAGCC CTGGCAGGCC
  W
  GGGACTCACT GTAAACAAGG CAGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39074598	mCV23955582	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss149266944	ENSMUSSNP6730715	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A
ss324392146	CHEV_13_67553140	CHEVERUD	SCREENING_POP	r	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29496309					SNP	T	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67600323 () rs orientation: reverse

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	within coordinates
Rr388629	regulatory region 388629	within coordinates
Tssr120253	transcription start site region 120253	945 bp downstream
Tssr123102	transcription start site region 123102	566 bp upstream
Zfp874a	zinc finger protein 874a	580 bp upstream