rs29496540 SNP Detail

Summary

• ID
  rs29496540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98827214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA TTCAGGAGGC AGAGGCAGGC
  R
  GATCTCTGTG AAGTTGAGGT CAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39073907	mCV24334936	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss145056181	ENSMUSSNP4909849	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss324500810	CHEV_13_99460661	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29496540					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98827214 () rs orientation: forward

Symbol	Name	Function Class
Tmem171	transmembrane protein 171	within coordinates
Tssr120815	transcription start site region 120815	1598 bp upstream
Tssr123632	transcription start site region 123632	1445 bp downstream
Tssr123633	transcription start site region 123633	1489 bp downstream