rs29496693 SNP Detail

Summary

• ID
  rs29496693
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44662345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG GGTTGGAGAA GTTGAGCAGC
  K
  ACCACTATAT CCATACACCC GCCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39073614	mCV23364540	ABI	CRAMUS_MOUSE	f	SNP		G	G					T		T
ss61784003	NES17519014	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	G	G		T	T	G	T	G	T	T	G	G
ss148953122	ENSMUSSNP5448944	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29496693					SNP	G	G	G	T	G	G	G	T	T	T	G	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61784003	NES17519014	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44662345 () rs orientation: forward

Symbol	Name	Function Class
Gm40930	predicted gene, 40930	164 bp downstream
Gm47792	predicted gene, 47792	589 bp upstream
Rr271968	regulatory region 271968	656 bp proximal
Rr276099	regulatory region 276099	655 bp proximal
Rr279318	regulatory region 279318	1834 bp proximal
Rr283666	regulatory region 283666	1287 bp distal
Rr403740	regulatory region 403740	1443 bp downstream