rs29497838 SNP Detail

Summary

• ID
  rs29497838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26727839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCCAGGAC GCGCGGCCTG AGGACACCTG CCCTGCTCCC
  CTCCGCGGGT CTCCGCCGAA CGAGCGGGGC CACTCCTGGT ATCACGTTCT CAGCTGGCCC
  R
  GCTCTGGCTG CTGGAGTGGT GGGCGTGGCG AGCTGAGCGG GAAAGGGGAG TGGGTAGTGA
  GAGATGACTA ATTCGGTCTA TAGCCCTCTG GCTATACCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39570956	mCV22899478	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29497838					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26727839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	1515 bp distal
Cpgi8811	CpG island 8811	within coordinates
Dusp1	dual specificity phosphatase 1	393 bp upstream
Gm56886	predicted gene, 56886	within coordinates
Rr339410	regulatory region 339410	within coordinates
Rr405112	regulatory region 405112	132 bp downstream
Rr405113	regulatory region 405113	within coordinates
Rr406958	regulatory region 406958	within coordinates
Tssr5044	transcription start site region 5044	86 bp upstream
Tssr5045	transcription start site region 5045	598 bp downstream
Tssr5046	transcription start site region 5046	651 bp downstream
Tssr5047	transcription start site region 5047	660 bp downstream
Tssr143231	transcription start site region 143231	1364 bp downstream
Tssr143232	transcription start site region 143232	185 bp downstream
Tssr143233	transcription start site region 143233	134 bp downstream
Tssr143234	transcription start site region 143234	91 bp downstream
Tssr143235	transcription start site region 143235	836 bp upstream
Tssr143236	transcription start site region 143236	861 bp upstream
Tssr146950	transcription start site region 146950	1693 bp upstream
Tssr146951	transcription start site region 146951	1206 bp upstream
Tssr146952	transcription start site region 146952	658 bp upstream
Tssr146953	transcription start site region 146953	618 bp upstream
Tssr146954	transcription start site region 146954	383 bp upstream
Tssr146955	transcription start site region 146955	within coordinates
Tssr146956	transcription start site region 146956	629 bp downstream
Tssr146957	transcription start site region 146957	694 bp downstream