rs29498227 SNP Detail

Summary

• ID
  rs29498227
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47748053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGGAA CCAGGGACTT
  TGGTGAGTGC ACCCCGGCTG GGGGAAAAAA AAAAAAAAAA AACAAGGGAG AGTTCCCCGT
  GGCGCCTCTT CCCTCCTGGC TCTGGCGTCA CTTGGGCGCT GGGAAAGCGG GCTGGGGCAG
  GGACACGTTG GAACCTGTGG ACCGGCTGAG GAGATGCTGG GAAGGGGAAG GAGGCGCGGC
  W
  GCCCGAGTCA GAGAGGTGCA GGGAACCCCT GAAGTGAGGC CGCCGATCCT TGCCGCCCTC
  ACCTGCCGTT CCCTGTCTCC CTTCATAACC TTTGGTAGGG TTTCTGTTTG TGTGGCTGTC
  TTTGCTGTGT CTCCTACCAC ATATCCGCAT TCTGAGTCAG AGATCTAGAC GTCTGTCCCT
  AGTCCTTTCC GCTTCCTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39571074	mCV25219324	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss145706741	ENSMUSSNP1005935	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29498227					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47748053 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	within coordinates
Cimip3	ciliary microtubule inner protein 3	within coordinates
Cpgi9259	CpG island 9259	within coordinates
Rr339933	regulatory region 339933	within coordinates
Tssr144911	transcription start site region 144911	533 bp downstream
Tssr144912	transcription start site region 144912	520 bp downstream
Tssr144913	transcription start site region 144913	489 bp downstream
Tssr144914	transcription start site region 144914	470 bp downstream
Tssr144915	transcription start site region 144915	385 bp downstream
Tssr148437	transcription start site region 148437	92 bp downstream
Tssr148438	transcription start site region 148438	237 bp downstream