rs29498386 SNP Detail

Summary

• ID
  rs29498386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165437992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACGCTCAC GGAGTATTAG
  GGAAGCAGGA CTGGGAGAGG TGTCCCATCG CTAAAGCCTC AAAGTGCTTT CTTTACTCCG
  CAGTTGAATG TGAGATTTTC TTGCAAGGCA CATTGGGCCC CAAAACCATC CCAGGGCTCA
  GACTTGACAG CCCTCGCTCC TTGCCTGTGG AAAAAGCAAG GCAGAAACGC TATCGCCTAT
  Y
  CTCCCTCCCT CTTCCCGCCT CAGTCTGAAA TGCTACATAA CTTTTAACGA CTTTAAGTAT
  ATATAATATA TAACGCGATA TTATATATAA ATATGTCGTG CGAGGTACAG AAGCCACTCC
  TGGTGGGAAG GTTTAACGAA GTGAGAGAAA GTACTAGGAT TTACAAACAC CAGGGAAGCA
  TTTGAATTAT GTCTGAGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45319589	mCV23743213	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148241336	ENSMUSSNP5071564	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320608377	CHEV_2_165421572	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29498386					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165437992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	237 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569955	regulatory region 569955	1030 bp distal
Rr569956	regulatory region 569956	within coordinates
Rr569957	regulatory region 569957	837 bp distal
Rr569958	regulatory region 569958	660 bp distal
Rr569959	regulatory region 569959	1477 bp proximal
Tssr21727	transcription start site region 21727	992 bp downstream
Tssr21728	transcription start site region 21728	99 bp upstream