rs29498558 SNP Detail

Summary

• ID
  rs29498558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25518555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC TCGGACAGCA CTACCAGGAT
  Y
  ATCAAAGACG ACATGCTTTG TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss39570989	mCV24352648	ABI	CRAMUS_MOUSE	f	SNP	T	T	C		T
ss48355865	NES12244146	PERLEGEN	MM_PANEL2	f	SNP				C		T		C	C	C
ss145383705	ENSMUSSNP3948082	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss325337071	CHEV_17_25436526	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs29498558					SNP	T	T	C	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48355865	NES12244146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25518555 () rs orientation: forward

Symbol	Name	Function Class
Prss34	serine protease 34	within coordinates
Tssr143150	transcription start site region 143150	1178 bp downstream