rs29498577 SNP Detail

Summary

• ID
  rs29498577
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121978908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTTCTGA ATTCGAGGCC AGCCTGGTCT ACAGAGTGAG
  TTCCAGGACA GCCAGGGTTA CACAAAGAAA CCCTGTCTCG AAAAAATAAA TAAAGGTCTC
  W
  GGGTATGAGG CTTATTGCAA TGCTGAGGAC CTTGTGAGCT TCTTAAGTTT GAAAGTACGT
  CTACAATGTA AATGTTATGG TTCCCCGTGT ATTAAGACA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45319892	mCV24434409	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss147410032	ENSMUSSNP1701226	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320487209	CHEV_2_121974163	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29498577					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121978908 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	Intron
Cpgi12169	CpG island 12169	183 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	698 bp downstream
Rr563912	regulatory region 563912	731 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	933 bp downstream
Tssr19805	transcription start site region 19805	731 bp downstream
Tssr19806	transcription start site region 19806	699 bp downstream
Tssr19807	transcription start site region 19807	737 bp upstream
Tssr19808	transcription start site region 19808	790 bp upstream
Tssr19809	transcription start site region 19809	1134 bp upstream
Tssr25953	transcription start site region 25953	1470 bp upstream
Tssr25954	transcription start site region 25954	907 bp upstream